Please describe the problem.

Somewhat too late for our current usecase since older git-annex would not know about it, but I think could be generalized into adding a configuration variable right away for any automated migration. E.g. there is no variable to prevent autoupgrades of the repos (e.g. from v5 to the next one etc), but AFAIK there is none for automated conversion" into adjusted/master(unlocked) mode.

Rationale: With thaw/freeze commands we now can use git-annex in indirect (default) mode on our HPC. But that requires a recent version of git-annex. User might have some other (older) version of git-annex available system-wide by default, and if the user forgets to switch to new version of git-annex before using it, it might trigger git-annex to realize that it operates on crippled FS, and since not knowing about thaw/freeze -- it just migrates repository to adjusted, which is very undesired.

What steps will reproduce the problem?

here is a demo of older git-annex going back to adjusted branch mode... yet to discover how else we could have migrated without directly invoking git annex init:

[d31548v@discovery7 d31548v]$ mkdir repo
[d31548v@discovery7 d31548v]$ cd repo
[d31548v@discovery7 repo]$ git init
Initialized empty Git repository in /dartfs/rc/lab/D/DBIC/DBIC/d31548v/repo/.git/
[d31548v@discovery7 repo]$ git config --add annex.thawcontent-command "$HOME/bin-annex/thaw-content %path"
[d31548v@discovery7 repo]$ git config --add annex.freezecontent-command "$HOME/bin-annex/freeze-content %path"
[d31548v@discovery7 repo]$ git annex init
init  ok
(recording state in git...)
[d31548v@discovery7 repo]$ echo 123 > 123
[d31548v@discovery7 repo]$ git annex add 123
add 123 
(recording state in git...)
git comm[d31548v@discovery7 repo]$ git commit -m 'added 123 in indirect mode' 123
[master (root-commit) 3ceb200] added 123 in indirect mode
 1 file changed, 1 insertion(+)
 create mode 120000 123
[d31548v@discovery7 repo]$ ls -ld 123
lrwxr-x--- 1 d31548v rc-DBIC 178 May  6 11:19 123 -> .git/annex/objects/G6/qW/SHA256E-s4--181210f8f9c779c26da1d9b2075bde0127302ee0e3fca38c9a83f5b1dd8e5d3b/SHA256E-s4--181210f8f9c779c26da1d9b2075bde0127302ee0e3fca38c9a83f5b1dd8e5d3b
[d31548v@discovery7 repo]$ ls -l .git/annex/objects
total 3
drwxr-x--- 3 d31548v rc-DBIC 20 May  6 11:19 G6
[d31548v@discovery7 repo]$ export PATH=/opt/bin:$PATH
[d31548v@discovery7 repo]$ git annex version | head -n 1
git-annex version: 8.20200502-g55acb2e52
[d31548v@discovery7 repo]$ git annex drop 123
drop 123 
git-annex: failed to lock content: .git/annex/objects/G6/qW/SHA256E-s4--181210f8f9c779c26da1d9b2075bde0127302ee0e3fca38c9a83f5b1dd8e5d3b/SHA256E-s4--181210f8f9c779c26da1d9b2075bde0127302ee0e3fca38c9a83f5b1dd8e5d3b: openFd: permission denied (Permission denied)
git-annex: drop: 1 failed
[d31548v@discovery7 repo]$ git annex init
  Filesystem allows writing to files whose write bit is not set.

  Detected a crippled filesystem.

  Disabling core.symlinks.
(scanning for unlocked files...)

  Entering an adjusted branch where files are unlocked as this filesystem does not support locked files.

Switched to branch 'adjusted/master(unlocked)'