projects/repronim/bugs-done/annex sets remote (regular http) to be ignored while running in docker container
yoh
http://git-annex.branchable.com/projects/repronim/bugs-done/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container/
git-annex
ikiwiki
2023-01-05T17:30:31Z
comment 1
http://git-annex.branchable.com/projects/repronim/bugs-done/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container/comment_1_130f2600057aa5b648f7798c49b4ea60/
joey
2023-01-05T17:30:31Z
2018-11-12T18:42:53Z
<p>It does seem to work just fine with current git-annex outside
docker.</p>
<p>Given the insecurity-to-weight ratio of docker and the number of hoops
I would have to jump through to run that docker command,
it may be several days until I have time, bandwidth, and power to try
it myself.. If you want to show the debug output, that generally doesn't
hurt.</p>
<p>(Please include the git-annex version information in all bug reports.)</p>
comment 2
http://git-annex.branchable.com/projects/repronim/bugs-done/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container/comment_2_802f85441c42ac079b6ecaea39a63c81/
yarikoptic
2023-01-05T17:30:31Z
2018-11-12T19:27:48Z
<p>Just want to check first -- you didn't miss my fancy foldable "A sample docker run" in the original submission? (has annex version at the bottom), did you?</p>
<p>and yes -- works fine outside of docker on the same box (well - my laptop).</p>
<p>FWIW, you are welcome to try it on smaug, you are a part of <code>docker</code> group there. For some reason docker is slowish there.</p>
<p>Interestingly, the version of that image being different on smaug, output might be more informative (?):</p>
<div class="highlight-sh"><pre class="hl"><span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.816486231</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitSuccess
download failed<span class="hl opt">:</span> ConnectionFailure Network.BSD.getProtocolByName<span class="hl opt">:</span> does not exist <span class="hl opt">(</span>no such protocol name<span class="hl opt">:</span> tcp<span class="hl opt">)</span>
Remote origin not usable by git-annex<span class="hl opt">;</span> setting annex-ignore
</pre></div>
<p>And here is (folded) full output of that run:</p>
<p><details>
<summary>Docker run with older git annex 6.20180626+gitg12cd64369-1~ndall+1</summary></p>
<div class="highlight-sh"><pre class="hl">$<span class="hl opt">></span> docker run <span class="hl kwb">-it --rm --entrypoint</span> bash nipy<span class="hl opt">/</span>heudiconv<span class="hl opt">:</span>annex-6.20180626 <span class="hl kwb">-c</span> <span class="hl str">"cd /tmp/ && rm -rf /tmp/MEEPI3; git clone http://datasets-tests.datalad.org/dicoms/velasco/MEEPI/.git MEEPI3 && cd MEEPI3 && git annex info --debug; echo -e '</span><span class="hl esc">\n\n</span><span class="hl str">CURL:'; curl http://datasets-tests.datalad.org/dicoms/velasco/MEEPI/.git/config; git annex version"</span>
Cloning into <span class="hl str">'MEEPI3'</span>...
remote<span class="hl opt">:</span> Counting objects<span class="hl opt">:</span> <span class="hl num">101</span><span class="hl opt">,</span> <span class="hl kwa">done</span>.
remote<span class="hl opt">:</span> Compressing objects<span class="hl opt">:</span> <span class="hl num">100</span><span class="hl opt">% (</span><span class="hl num">82</span><span class="hl opt">/</span><span class="hl num">82</span><span class="hl opt">),</span> <span class="hl kwa">done</span>.
remote<span class="hl opt">:</span> Total <span class="hl num">101</span> <span class="hl opt">(</span>delta <span class="hl num">35</span><span class="hl opt">),</span> reused <span class="hl num">0</span> <span class="hl opt">(</span>delta <span class="hl num">0</span><span class="hl opt">)</span>
Receiving objects<span class="hl opt">:</span> <span class="hl num">100</span><span class="hl opt">% (</span><span class="hl num">101</span><span class="hl opt">/</span><span class="hl num">101</span><span class="hl opt">),</span> <span class="hl num">11.70</span> KiB | <span class="hl num">0</span> bytes<span class="hl opt">/</span>s<span class="hl opt">,</span> <span class="hl kwa">done</span>.
Resolving deltas<span class="hl opt">:</span> <span class="hl num">100</span><span class="hl opt">% (</span><span class="hl num">35</span><span class="hl opt">/</span><span class="hl num">35</span><span class="hl opt">),</span> <span class="hl kwa">done</span>.
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.497644702</span><span class="hl opt">]</span> <span class="hl kwb">read</span><span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"show-ref"</span><span class="hl opt">,</span><span class="hl str">"git-annex"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.502984282</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitSuccess
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.503282134</span><span class="hl opt">]</span> <span class="hl kwb">read</span><span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"show-ref"</span><span class="hl opt">,</span><span class="hl str">"--hash"</span><span class="hl opt">,</span><span class="hl str">"refs/heads/git-annex"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.508604943</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitFailure <span class="hl num">1</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.508770986</span><span class="hl opt">]</span> call<span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"show-ref"</span><span class="hl opt">,</span><span class="hl str">"--verify"</span><span class="hl opt">,</span><span class="hl str">"-q"</span><span class="hl opt">,</span><span class="hl str">"origin/git-annex"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.512907558</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitFailure <span class="hl num">1</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.513545552</span><span class="hl opt">]</span> <span class="hl kwb">read</span><span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"write-tree"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.678146279</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitSuccess
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">09</span><span class="hl opt">:</span><span class="hl num">33.678410423</span><span class="hl opt">]</span> chat<span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"commit-tree"</span><span class="hl opt">,</span><span class="hl str">"4b825dc642cb6eb9a060e54bf8d69288fbee4904"</span><span class="hl opt">,</span><span class="hl str">"--no-gpg-sign"</span><span class="hl opt">]</span>
<span class="hl opt">***</span> Please tell me who you are.
Run
git config <span class="hl kwb">--global</span> user.email <span class="hl str">"you@example.com"</span>
git config <span class="hl kwb">--global</span> user.name <span class="hl str">"Your Name"</span>
to <span class="hl kwb">set</span> your account<span class="hl str">'s default identity.</span>
<span class="hl str">Omit --global to set the identity only in this repository.</span>
<span class="hl str"></span>
<span class="hl str">fatal: unable to auto-detect email address (got '</span>root@<span class="hl num">5</span>d3e0680b6fc.<span class="hl opt">(</span>none<span class="hl opt">)</span><span class="hl str">')</span>
<span class="hl str">[2018-11-12 19:09:33.684364456] process done ExitFailure 128</span>
<span class="hl str">[2018-11-12 19:09:33.684636234] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","user.name","root"]</span>
<span class="hl str">[2018-11-12 19:09:33.68955458] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.689684113] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:09:33.693793841] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.693980718] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","user.email","root"]</span>
<span class="hl str">[2018-11-12 19:09:33.697545036] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.697671055] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:09:33.701348909] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.701520785] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]</span>
<span class="hl str">[2018-11-12 19:09:33.704126701] process done ExitFailure 1</span>
<span class="hl str">[2018-11-12 19:09:33.704281927] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--verify","-q","origin/git-annex"]</span>
<span class="hl str">[2018-11-12 19:09:33.708300009] process done ExitFailure 1</span>
<span class="hl str">[2018-11-12 19:09:33.708510969] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","write-tree"]</span>
<span class="hl str">[2018-11-12 19:09:33.712223058] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.712455349] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","commit-tree","4b825dc642cb6eb9a060e54bf8d69288fbee4904","--no-gpg-sign"]</span>
<span class="hl str">[2018-11-12 19:09:33.717700724] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.717878364] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-ref","refs/heads/git-annex","b6d1fa4a9fd6e1e2b92cc4472374ff788f4ffe82"]</span>
<span class="hl str">[2018-11-12 19:09:33.72191105] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.72266107] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","annex.uuid","f7e33e3d-b3aa-473a-9fa3-213ef312c646"]</span>
<span class="hl str">[2018-11-12 19:09:33.726190775] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.726346741] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:09:33.729706319] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.73202387] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","git-annex"]</span>
<span class="hl str">[2018-11-12 19:09:33.73679675] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.73698363] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]</span>
<span class="hl str">[2018-11-12 19:09:33.74067435] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.741001325] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","log","refs/heads/git-annex..b6d1fa4a9fd6e1e2b92cc4472374ff788f4ffe82","--pretty=%H","-n1"]</span>
<span class="hl str">[2018-11-12 19:09:33.745857469] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.74605887] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","log","refs/heads/git-annex..04619d91febf86de056a8d091a5f06d464a01c04","--pretty=%H","-n1"]</span>
<span class="hl str">[2018-11-12 19:09:33.751124219] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.751630501] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch"]</span>
<span class="hl str">[2018-11-12 19:09:33.752216628] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch-check=%(objectname) %(objecttype) %(objectsize)"]</span>
<span class="hl str">(merging origin/git-annex into git-annex...)</span>
<span class="hl str">[2018-11-12 19:09:33.755344426] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","hash-object","-w","--stdin-paths","--no-filters"]</span>
<span class="hl str">[2018-11-12 19:09:33.756221301] feed: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-index","-z","--index-info"]</span>
<span class="hl str">[2018-11-12 19:09:33.756880319] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","diff-index","--raw","-z","-r","--no-renames","-l0","--cached","04619d91febf86de056a8d091a5f06d464a01c04","--"]</span>
<span class="hl str">[2018-11-12 19:09:33.7622414] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.763122925] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.763684956] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","log","04619d91febf86de056a8d091a5f06d464a01c04..refs/heads/git-annex","--pretty=%H","-n1"]</span>
<span class="hl str">[2018-11-12 19:09:33.768141316] process done ExitSuccess</span>
<span class="hl str">(recording state in git...)</span>
<span class="hl str">[2018-11-12 19:09:33.768438348] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","write-tree"]</span>
<span class="hl str">[2018-11-12 19:09:33.77206771] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.772262959] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","commit-tree","f21c20ffe799304525ca1aeace21935c47926873","--no-gpg-sign","-p","refs/heads/git-annex","-p","04619d91febf86de056a8d091a5f06d464a01c04"]</span>
<span class="hl str">[2018-11-12 19:09:33.776274369] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.77643436] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-ref","refs/heads/git-annex","d076e4f8669ea8f8ddce8685e85af824a9697100"]</span>
<span class="hl str">[2018-11-12 19:09:33.781233336] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.783050992] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","annex.version","5"]</span>
<span class="hl str">[2018-11-12 19:09:33.787781391] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.78793579] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:09:33.790756389] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.790954849] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","symbolic-ref","-q","HEAD"]</span>
<span class="hl str">[2018-11-12 19:09:33.795171566] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.795368409] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","refs/heads/master"]</span>
<span class="hl str">[2018-11-12 19:09:33.800060961] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.800259221] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","symbolic-ref","-q","HEAD"]</span>
<span class="hl str">[2018-11-12 19:09:33.803306615] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.803473861] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/master"]</span>
<span class="hl str">[2018-11-12 19:09:33.807579032] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.807783985] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","checkout","-q","-B","master"]</span>
<span class="hl str">[2018-11-12 19:09:33.814124796] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.815125257] read: uname ["-n"]</span>
<span class="hl str">[2018-11-12 19:09:33.816486231] process done ExitSuccess</span>
<span class="hl str">download failed: ConnectionFailure Network.BSD.getProtocolByName: does not exist (no such protocol name: tcp)</span>
<span class="hl str"></span>
<span class="hl str"> Remote origin not usable by git-annex; setting annex-ignore</span>
<span class="hl str">[2018-11-12 19:09:33.94194622] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","remote.origin.annex-ignore","true"]</span>
<span class="hl str">[2018-11-12 19:09:33.947114461] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.9474738] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:09:33.951509986] process done ExitSuccess</span>
<span class="hl str">repository mode: indirect</span>
<span class="hl str">trusted repositories: 0</span>
<span class="hl str">semitrusted repositories: 6</span>
<span class="hl str"> 00000000-0000-0000-0000-000000000001 -- web</span>
<span class="hl str"> 00000000-0000-0000-0000-000000000002 -- bittorrent</span>
<span class="hl str"> 41bc6812-269a-47af-a7c9-ba2d30e55642 -- yoh@smaug:/mnt/btrfs/datasets/datalad/crawl/dicoms/velasco/MEEPI</span>
<span class="hl str"> 757a81e7-f905-4796-9941-a2772ec190b6 -- yoh@falkor:/srv/datasets.datalad.org/www/dicoms/velasco/MEEPI</span>
<span class="hl str"> c04eb54b-4b4e-5755-8436-866b043170fa -- datalad-archives</span>
<span class="hl str"> f7e33e3d-b3aa-473a-9fa3-213ef312c646 -- root@5d3e0680b6fc:/tmp/MEEPI3 [here]</span>
<span class="hl str">untrusted repositories: 0</span>
<span class="hl str">transfers in progress: none</span>
<span class="hl str">available local disk space: 34.84 terabytes (+1 megabyte reserved)</span>
<span class="hl str">local annex keys: 0</span>
<span class="hl str">local annex size: 0 bytes</span>
<span class="hl str">annexed files in working tree: [2018-11-12 19:09:33.953212804] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","ls-files","--cached","--others","-z","--","."]</span>
<span class="hl str">[2018-11-12 19:09:33.957668639] process done ExitSuccess</span>
<span class="hl str">3</span>
<span class="hl str">size of annexed files in working tree: 5.87 megabytes</span>
<span class="hl str">bloom filter size: 32 mebibytes (0% full)</span>
<span class="hl str">backend usage: </span>
<span class="hl str"> MD5E: 3</span>
<span class="hl str">[2018-11-12 19:09:33.958614844] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.95905526] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:09:33.959474605] process done ExitSuccess</span>
<span class="hl str"></span>
<span class="hl str"></span>
<span class="hl str">CURL:</span>
<span class="hl str">[core]</span>
<span class="hl str"> repositoryformatversion = 0</span>
<span class="hl str"> filemode = true</span>
<span class="hl str"> bare = false</span>
<span class="hl str"> logallrefupdates = true</span>
<span class="hl str"> sharedrepository = 2</span>
<span class="hl str">[receive]</span>
<span class="hl str"> denyNonFastforwards = true</span>
<span class="hl str"> denyCurrentBranch = updateInstead</span>
<span class="hl str">[annex]</span>
<span class="hl str"> uuid = 757a81e7-f905-4796-9941-a2772ec190b6</span>
<span class="hl str"> version = 5</span>
<span class="hl str">git-annex version: 6.20180626+gitg12cd64369-1~ndall+1</span>
<span class="hl str">build flags: Assistant Webapp Pairing S3(multipartupload)(storageclasses) WebDAV Inotify DBus DesktopNotify ConcurrentOutput TorrentParser MagicMime Feeds Testsuite</span>
<span class="hl str">dependency versions: aws-0.16 bloomfilter-2.0.1.0 cryptonite-0.23 DAV-1.3.1 feed-0.3.12.0 ghc-8.0.2 http-client-0.5.7.1 persistent-sqlite-2.6.3 torrent-10000.1.1 uuid-1.3.13 yesod-1.4.5</span>
<span class="hl str">key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224 BLAKE2SP256E BLAKE2SP256 BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL</span>
<span class="hl str">remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar hook external</span>
<span class="hl str">operating system: linux x86_64</span>
<span class="hl str">supported repository versions: 3 5 6</span>
<span class="hl str">upgrade supported from repository versions: 0 1 2 3 4 5</span>
<span class="hl str">local repository version: 5</span>
</pre></div>
<p></details></p>
<p>Having pulled the <code>nipy/heudiconv:latest</code>, original reported behavior reproduces</p>
<p><details>
<summary>Docker run with newer git annex </summary></p>
<div class="highlight-sh"><pre class="hl">$<span class="hl opt">></span> docker run <span class="hl kwb">-it --rm --entrypoint</span> bash nipy<span class="hl opt">/</span>heudiconv<span class="hl opt">:</span>latest <span class="hl kwb">-c</span> <span class="hl str">"cd /tmp/ && rm -rf /tmp/MEEPI3; git clone http://datasets-tests.datalad.org/dicoms/velasco/MEEPI/.git MEEPI3 && cd MEEPI3 && git annex info --debug; echo -e '</span><span class="hl esc">\n\n</span><span class="hl str">CURL:'; curl http://datasets-tests.datalad.org/dicoms/velasco/MEEPI/.git/config; git annex version"</span>
Cloning into <span class="hl str">'MEEPI3'</span>...
remote<span class="hl opt">:</span> Counting objects<span class="hl opt">:</span> <span class="hl num">101</span><span class="hl opt">,</span> <span class="hl kwa">done</span>.
remote<span class="hl opt">:</span> Compressing objects<span class="hl opt">:</span> <span class="hl num">100</span><span class="hl opt">% (</span><span class="hl num">82</span><span class="hl opt">/</span><span class="hl num">82</span><span class="hl opt">),</span> <span class="hl kwa">done</span>.
remote<span class="hl opt">:</span> Total <span class="hl num">101</span> <span class="hl opt">(</span>delta <span class="hl num">35</span><span class="hl opt">),</span> reused <span class="hl num">0</span> <span class="hl opt">(</span>delta <span class="hl num">0</span><span class="hl opt">)</span>
Receiving objects<span class="hl opt">:</span> <span class="hl num">100</span><span class="hl opt">% (</span><span class="hl num">101</span><span class="hl opt">/</span><span class="hl num">101</span><span class="hl opt">),</span> <span class="hl num">11.70</span> KiB | <span class="hl num">0</span> bytes<span class="hl opt">/</span>s<span class="hl opt">,</span> <span class="hl kwa">done</span>.
Resolving deltas<span class="hl opt">:</span> <span class="hl num">100</span><span class="hl opt">% (</span><span class="hl num">35</span><span class="hl opt">/</span><span class="hl num">35</span><span class="hl opt">),</span> <span class="hl kwa">done</span>.
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.168203115</span><span class="hl opt">]</span> <span class="hl kwb">read</span><span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"show-ref"</span><span class="hl opt">,</span><span class="hl str">"git-annex"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.173678013</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitSuccess
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.174017869</span><span class="hl opt">]</span> <span class="hl kwb">read</span><span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"show-ref"</span><span class="hl opt">,</span><span class="hl str">"--hash"</span><span class="hl opt">,</span><span class="hl str">"refs/heads/git-annex"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.17921506</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitFailure <span class="hl num">1</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.179386236</span><span class="hl opt">]</span> call<span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"show-ref"</span><span class="hl opt">,</span><span class="hl str">"--verify"</span><span class="hl opt">,</span><span class="hl str">"-q"</span><span class="hl opt">,</span><span class="hl str">"origin/git-annex"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.183673031</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitFailure <span class="hl num">1</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.184420434</span><span class="hl opt">]</span> <span class="hl kwb">read</span><span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"write-tree"</span><span class="hl opt">]</span>
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.189923909</span><span class="hl opt">]</span> process <span class="hl kwa">done</span> ExitSuccess
<span class="hl opt">[</span><span class="hl num">2018</span><span class="hl kwb">-11-12</span> <span class="hl num">19</span><span class="hl opt">:</span><span class="hl num">16</span><span class="hl opt">:</span><span class="hl num">30.190097446</span><span class="hl opt">]</span> chat<span class="hl opt">:</span> git <span class="hl opt">[</span><span class="hl str">"--git-dir=.git"</span><span class="hl opt">,</span><span class="hl str">"--work-tree=."</span><span class="hl opt">,</span><span class="hl str">"--literal-pathspecs"</span><span class="hl opt">,</span><span class="hl str">"commit-tree"</span><span class="hl opt">,</span><span class="hl str">"4b825dc642cb6eb9a060e54bf8d69288fbee4904"</span><span class="hl opt">,</span><span class="hl str">"--no-gpg-sign"</span><span class="hl opt">]</span>
<span class="hl opt">***</span> Please tell me who you are.
Run
git config <span class="hl kwb">--global</span> user.email <span class="hl str">"you@example.com"</span>
git config <span class="hl kwb">--global</span> user.name <span class="hl str">"Your Name"</span>
to <span class="hl kwb">set</span> your account<span class="hl str">'s default identity.</span>
<span class="hl str">Omit --global to set the identity only in this repository.</span>
<span class="hl str"></span>
<span class="hl str">fatal: unable to auto-detect email address (got '</span>root@b88726a4382b.<span class="hl opt">(</span>none<span class="hl opt">)</span><span class="hl str">')</span>
<span class="hl str">[2018-11-12 19:16:30.194707379] process done ExitFailure 128</span>
<span class="hl str">[2018-11-12 19:16:30.194989101] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","user.name","root"]</span>
<span class="hl str">[2018-11-12 19:16:30.199736477] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.199882502] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:16:30.204311006] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.204467196] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","user.email","root"]</span>
<span class="hl str">[2018-11-12 19:16:30.209146004] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.2092902] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:16:30.21315675] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.213311976] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]</span>
<span class="hl str">[2018-11-12 19:16:30.217993425] process done ExitFailure 1</span>
<span class="hl str">[2018-11-12 19:16:30.218146321] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--verify","-q","origin/git-annex"]</span>
<span class="hl str">[2018-11-12 19:16:30.22226559] process done ExitFailure 1</span>
<span class="hl str">[2018-11-12 19:16:30.596337472] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","write-tree"]</span>
<span class="hl str">[2018-11-12 19:16:30.601348306] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.601517345] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","commit-tree","4b825dc642cb6eb9a060e54bf8d69288fbee4904","--no-gpg-sign"]</span>
<span class="hl str">[2018-11-12 19:16:30.607398795] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.607513593] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-ref","refs/heads/git-annex","44bd175787872acfd21593ef7f75224da84f728e"]</span>
<span class="hl str">[2018-11-12 19:16:30.612739367] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.613560258] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","annex.uuid","d886638a-7427-46c1-911d-2febef7fc831"]</span>
<span class="hl str">[2018-11-12 19:16:30.617982319] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.618139741] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:16:30.622404815] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.624792574] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","git-annex"]</span>
<span class="hl str">[2018-11-12 19:16:30.629506669] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.629670469] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/git-annex"]</span>
<span class="hl str">[2018-11-12 19:16:30.633873559] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.634159315] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","log","refs/heads/git-annex..44bd175787872acfd21593ef7f75224da84f728e","--pretty=%H","-n1"]</span>
<span class="hl str">[2018-11-12 19:16:30.638868994] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.63901631] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","log","refs/heads/git-annex..04619d91febf86de056a8d091a5f06d464a01c04","--pretty=%H","-n1"]</span>
<span class="hl str">[2018-11-12 19:16:30.644133907] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.644558474] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch"]</span>
<span class="hl str">[2018-11-12 19:16:30.645069766] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","cat-file","--batch-check=%(objectname) %(objecttype) %(objectsize)"]</span>
<span class="hl str">(merging origin/git-annex into git-annex...)</span>
<span class="hl str">[2018-11-12 19:16:30.648787618] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","hash-object","-w","--stdin-paths","--no-filters"]</span>
<span class="hl str">[2018-11-12 19:16:30.649353618] feed: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-index","-z","--index-info"]</span>
<span class="hl str">[2018-11-12 19:16:30.650115411] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","diff-index","--raw","-z","-r","--no-renames","-l0","--cached","04619d91febf86de056a8d091a5f06d464a01c04","--"]</span>
<span class="hl str">[2018-11-12 19:16:30.654663147] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.655618594] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.656176449] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","log","04619d91febf86de056a8d091a5f06d464a01c04..refs/heads/git-annex","--pretty=%H","-n1"]</span>
<span class="hl str">[2018-11-12 19:16:30.661120546] process done ExitSuccess</span>
<span class="hl str">(recording state in git...)</span>
<span class="hl str">[2018-11-12 19:16:30.661335622] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","write-tree"]</span>
<span class="hl str">[2018-11-12 19:16:30.666151568] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.666446029] chat: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","commit-tree","f21c20ffe799304525ca1aeace21935c47926873","--no-gpg-sign","-p","refs/heads/git-annex","-p","04619d91febf86de056a8d091a5f06d464a01c04"]</span>
<span class="hl str">[2018-11-12 19:16:30.67115132] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.671318437] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","update-ref","refs/heads/git-annex","e9b0bb4be7614f8dab19660fc8b3c00fec9c1180"]</span>
<span class="hl str">[2018-11-12 19:16:30.676528891] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.678481925] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","annex.version","5"]</span>
<span class="hl str">[2018-11-12 19:16:30.682563316] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.682715955] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:16:30.686466067] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.68663411] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","symbolic-ref","-q","HEAD"]</span>
<span class="hl str">[2018-11-12 19:16:30.690971999] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.691134218] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","refs/heads/master"]</span>
<span class="hl str">[2018-11-12 19:16:30.695344845] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.695518841] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","symbolic-ref","-q","HEAD"]</span>
<span class="hl str">[2018-11-12 19:16:30.699919641] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.700082394] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","show-ref","--hash","refs/heads/master"]</span>
<span class="hl str">[2018-11-12 19:16:30.704659184] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.704830677] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","checkout","-q","-B","master"]</span>
<span class="hl str">[2018-11-12 19:16:30.709278877] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.710297742] read: uname ["-n"]</span>
<span class="hl str">[2018-11-12 19:16:30.730187288] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.964899187] Request {</span>
<span class="hl str"> host = "datasets-tests.datalad.org"</span>
<span class="hl str"> port = 80</span>
<span class="hl str"> secure = False</span>
<span class="hl str"> requestHeaders = [("Range","bytes=0-"),("Accept-Encoding","identity"),("User-Agent","git-annex/6.20181011+git124-g94aa0e2f6-1~ndall+1")]</span>
<span class="hl str"> path = "/dicoms/velasco/MEEPI/.git/config"</span>
<span class="hl str"> queryString = ""</span>
<span class="hl str"> method = "GET"</span>
<span class="hl str"> proxy = Nothing</span>
<span class="hl str"> rawBody = False</span>
<span class="hl str"> redirectCount = 10</span>
<span class="hl str"> responseTimeout = ResponseTimeoutDefault</span>
<span class="hl str"> requestVersion = HTTP/1.1</span>
<span class="hl str">}</span>
<span class="hl str"></span>
<span class="hl str"></span>
<span class="hl str"> Remote origin not usable by git-annex; setting annex-ignore</span>
<span class="hl str">[2018-11-12 19:16:30.965795741] call: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","config","remote.origin.annex-ignore","true"]</span>
<span class="hl str">[2018-11-12 19:16:30.9707034] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.970879863] read: git ["config","--null","--list"]</span>
<span class="hl str">[2018-11-12 19:16:30.975621212] process done ExitSuccess</span>
<span class="hl str">repository mode: indirect</span>
<span class="hl str">trusted repositories: 0</span>
<span class="hl str">semitrusted repositories: 6</span>
<span class="hl str"> 00000000-0000-0000-0000-000000000001 -- web</span>
<span class="hl str"> 00000000-0000-0000-0000-000000000002 -- bittorrent</span>
<span class="hl str"> 41bc6812-269a-47af-a7c9-ba2d30e55642 -- yoh@smaug:/mnt/btrfs/datasets/datalad/crawl/dicoms/velasco/MEEPI</span>
<span class="hl str"> 757a81e7-f905-4796-9941-a2772ec190b6 -- yoh@falkor:/srv/datasets.datalad.org/www/dicoms/velasco/MEEPI</span>
<span class="hl str"> c04eb54b-4b4e-5755-8436-866b043170fa -- datalad-archives</span>
<span class="hl str"> d886638a-7427-46c1-911d-2febef7fc831 -- root@b88726a4382b:/tmp/MEEPI3 [here]</span>
<span class="hl str">untrusted repositories: 0</span>
<span class="hl str">transfers in progress: none</span>
<span class="hl str">available local disk space: 34.83 terabytes (+1 megabyte reserved)</span>
<span class="hl str">local annex keys: 0</span>
<span class="hl str">local annex size: 0 bytes</span>
<span class="hl str">annexed files in working tree: [2018-11-12 19:16:30.978614061] read: git ["--git-dir=.git","--work-tree=.","--literal-pathspecs","ls-files","--cached","--others","-z","--","."]</span>
<span class="hl str">[2018-11-12 19:16:30.982161106] process done ExitSuccess</span>
<span class="hl str">3</span>
<span class="hl str">size of annexed files in working tree: 5.87 megabytes</span>
<span class="hl str">bloom filter size: 32 mebibytes (0% full)</span>
<span class="hl str">backend usage: </span>
<span class="hl str"> MD5E: 3</span>
<span class="hl str">[2018-11-12 19:16:30.983219045] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.984207325] process done ExitSuccess</span>
<span class="hl str">[2018-11-12 19:16:30.984715431] process done ExitSuccess</span>
<span class="hl str"></span>
<span class="hl str"></span>
<span class="hl str">CURL:</span>
<span class="hl str">[core]</span>
<span class="hl str"> repositoryformatversion = 0</span>
<span class="hl str"> filemode = true</span>
<span class="hl str"> bare = false</span>
<span class="hl str"> logallrefupdates = true</span>
<span class="hl str"> sharedrepository = 2</span>
<span class="hl str">[receive]</span>
<span class="hl str"> denyNonFastforwards = true</span>
<span class="hl str"> denyCurrentBranch = updateInstead</span>
<span class="hl str">[annex]</span>
<span class="hl str"> uuid = 757a81e7-f905-4796-9941-a2772ec190b6</span>
<span class="hl str"> version = 5</span>
<span class="hl str">git-annex version: 6.20181011+git124-g94aa0e2f6-1~ndall+1</span>
<span class="hl str">build flags: Assistant Webapp Pairing S3(multipartupload)(storageclasses) WebDAV Inotify DBus DesktopNotify TorrentParser MagicMime Feeds Testsuite</span>
<span class="hl str">dependency versions: aws-0.19 bloomfilter-2.0.1.0 cryptonite-0.25 DAV-1.3.2 feed-1.0.0.0 ghc-8.2.2 http-client-0.5.12 persistent-sqlite-2.8.1.2 torrent-10000.1.1 uuid-1.3.13 yesod-1.6.0</span>
<span class="hl str">key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224 BLAKE2SP256E BLAKE2SP256 BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL</span>
<span class="hl str">remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar hook external</span>
<span class="hl str">operating system: linux x86_64</span>
<span class="hl str">supported repository versions: 3 5 6</span>
<span class="hl str">upgrade supported from repository versions: 0 1 2 3 4 5</span>
<span class="hl str">local repository version: 5</span>
</pre></div>
<p></details></p>
<p>Reflecting on the discovery of that "no such protocol name", googled <a href="https://github.com/fpco/haskell-scratch/issues/2#issuecomment-285923941">github hit</a>, added <code>apt-get install -y libnss3 libnss-lwres libnss-mdns</code> to the new version of the docker image - that didn't help.</p>
comment 3
http://git-annex.branchable.com/projects/repronim/bugs-done/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container/comment_3_4d03d12bfba811e0a67551e10201200b/
yarikoptic
2023-01-05T17:30:31Z
2018-11-12T19:34:00Z
even though not that -- probably due to <code>--no-install-recommends</code> while installing git-annex-standalone... may be at least core needed libs needed for annex operation could be added to Depends for the git-annex debian pkg?
yeap -- it is netbase which is needed
http://git-annex.branchable.com/projects/repronim/bugs-done/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container/comment_4_1ea0f89c3c9e8bf1142b2c234cdf90c3/
yarikoptic
2023-01-05T17:30:31Z
2018-11-13T04:20:28Z
<p>spotted that netbase is among recommends thus is not installed while <code>apt-get install --no-install-recommends git-annex-standalone</code> . Installed and issue is gone.</p>
<ul>
<li><p>I feel like we had that issue/discussion before, but don't you think it would be valuable to make <code>netbase</code> a Depends not just Recommends?</p></li>
<li><p>Also it would be nice if there was a more logical error, info or at least debug message whenever annex fails to perform network operations, instead of just marking remote as "non-annex".</p></li>
</ul>
comment 5
http://git-annex.branchable.com/projects/repronim/bugs-done/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container/comment_5_72c67ef575c90071040cf5347d81ce01/
joey
2023-01-05T17:30:31Z
2018-11-13T17:30:33Z
<p>netbase was already added to depends in version 6.20180926.</p>
<p>Yes, I missed the folded data, the UI provides almost no clue that it's
an interactive element.</p>
my bad
http://git-annex.branchable.com/projects/repronim/bugs-done/annex_sets_remote___40__regular_http__41___to_be_ignored_while_running_in_docker_container/comment_6_dcfb1dfb33a690a73547a5855e0ee55d/
yarikoptic
2023-01-05T17:30:31Z
2018-11-15T12:34:58Z
<p>eh, and when you added it, I incorrectly adjusted the standalone patch in 042e20d895e022f283d7fb210e61bc19a77b0c39 by not including netbase into Depends.
I have emailed you the patch, and I think this issue could be closed with it</p>