I've just written a quick script which provides an output which ncdu will use.
It uses the size from the key for apparent size and the size of the file (if present) for the disk size so 'a' toggles between total size of the annex and the actually used disk space.
Is there anyone else interested in having this? If so, I'll tidy it up and release it
Whelp, didn't realise it had been over two weeks! Got caught up in other stuff (VR).
Here's the bitbucket repository!
I've coded my own JSON output so it doesn't depend on any non-core Perl modules.
Please let me know of any bugs, feature requests etc. Feedback would be appreciated, even just letting me know you are using it would be great!