Expect behaviors
git annex assistant doesn't annex the old files and annex "non-large files". According to the below quote from the git-annex assistant document:
By default, all files added are added to the annex, the same as when you run git annex add. If you configure annex.largefiles, files that it does not match will instead be added with git add.
Actual behaviors
Git annex replaces all old files (file is already stored by git before the git annex command) and newly added files with pointer files after using the git annex assistant command. Even I config annex.largefiles to include all files.
Context
Output of git annex version:
git-annex version: 10.20240129
build flags: Assistant Webapp Pairing FsEvents TorrentParser MagicMime Benchmark Feeds Testsuite S3 WebDAV
dependency versions: aws-0.24.1 bloomfilter-2.0.1.2 crypton-0.34 DAV-1.3.4 feed-1.3.2.1 ghc-9.6.3 http-client-0.7.16 persistent-sqlite-2.13.3.0 torrent-10000.1.3 uuid-1.3.15 yesod-1.6.2.1
key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2BP512E BLAKE2BP512 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224 BLAKE2SP256E BLAKE2SP256 BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL X*
remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar git-lfs httpalso borg hook external
operating system: darwin x86_64
supported repository versions: 8 9 10
upgrade supported from repository versions: 0 1 2 3 4 5 6 7 8 9 10
local repository version: 10
System: macOS Monterey Version 12.6 (21G115)