I wanted to implement management and synchronization of descriptive files (README.md etc) on the top of the large S3 bucket via git-annex so I could keep files in a git repo and rely on importree/exporttree functionality to keep bucket and repo in sync.

Looking at special_remotes/S3/ I didn't spot any option to achieve that.

I am not sure what would be the best option for this, given that greedy me might want to also eventually sync some docs/ prefix there: may be could be a white list of some keys/paths to include and/or exclude? May be some preferred content include expression could be specific enough to not demand full bucket traversal (unrealistic in feasible time) but rather limit to top level, e.g. include=^docs/ and include=^*.md or smth smarter?