I removed some archived directories perhaps foolishly with rm -rf. How do I find the files that I've had deleted?

I also have an issue where by I want one command to sync between two hardrives and github. Or do I have to: git-annex move --to {foo,bar}; git-annex drop; git-annex sync? Basically I want copies everywhere except on my laptop (X1C3).

I also expected my git dir to be much smaller than 1.4GB after dropping everything. Thanks!