repronim.org

The center for Reproducible Neuroimaging computation develops standards and tools to improve reproducibility. git-annex is used via DataLad and in the core of efforts such as YODA, repronim/containers, and heavily used by ReproMan.

TODOs

globus special remote as a "transport" layer [moreinfo] [projects/repronim]
Posted Fri Apr 5 02:25:10 2019 by yoh

Done

allow configuring assistant to add files locked [projects/repronim]
Posted Thu Jan 18 17:11:33 2024

specify freeze/thaw scripts relative to topdir [projects/repronim]
Posted Wed Oct 16 18:51:44 2024 by yoh

add --key to "annex log" [projects/repronim]
Posted Wed Jun 12 13:20:28 2024 by yoh

copy/move support for pushinsteadOf [projects/repronim]
Posted Fri Feb 2 16:27:19 2024 by yoh

way to instruct on how to decide on extension? [projects/repronim]
Posted Wed Apr 17 13:30:22 2024 by yoh

make annex "respect" .git/hooks/prepare-commit-msg [projects/repronim]
Posted Fri Feb 2 17:07:51 2024 by yoh

--json for unannex and ideally any other command [projects/repronim]
Posted Wed May 3 19:08:01 2023 by yoh

registerurl --remote REMOTE [projects/repronim]
Posted Fri Mar 31 22:15:24 2023 by yoh

git annex upgrade to not care about submod status? [projects/repronim]
Posted Mon Dec 12 23:03:31 2022 by yoh

not ask git credentials for password per each file [projects/repronim]
Posted Tue Sep 6 21:01:59 2022 by yoh

add --json-progress to `git annex add` [projects/repronim]
Posted Thu Apr 25 16:33:16 2019 by yoh

BUGs

pointer file in the form of annex symlink target gets restaged modified [projects/repronim]
Posted Sun Jun 30 18:52:22 2024 by yoh

git-annex add behaves differently from git on ACL [projects/repronim]
Posted Wed Oct 16 19:13:06 2024 by yoh

git-annex proceeds forward if freeze script fails [projects/repronim]
Posted Wed Oct 16 18:34:04 2024 by yoh

assistant does not add some of the (renamed) files [projects/repronim]
Posted Tue Oct 15 18:15:15 2024 by yoh

git diff in adj unlock reports diff for empty file [projects/repronim]
Posted Fri Sep 6 14:01:32 2024 by yoh

inception: pointer file can be ingested into the annex due to assistant bug or manually [projects/repronim]
Posted Wed Apr 17 13:58:16 2024 by yoh

git annex find dies of signal 11 some times on OSX [projects/repronim]
Posted Tue Jun 18 13:57:21 2024 by yoh

git annex get is silently stuck on P2P > GET 0 [projects/repronim]
Posted Wed May 29 18:14:42 2024 by yoh

annex get stalls over ssh [projects/repronim]
Posted Thu Jun 8 15:46:27 2023 by yoh

annex add freezes before moving: stopped working [projects/repronim]
Posted Mon Jan 16 19:36:05 2023 by yoh

should create leading dirs for annex.dbdir [projects/repronim]
Posted Wed Dec 28 16:23:48 2022 by yoh

Done

35 failed tests on beegfs [projects/repronim]
Posted Fri Aug 29 14:35:02 2025 by yoh

assistant does not commit anything, waiting? [projects/repronim]
Posted Thu May 8 18:14:38 2025 by yoh

change in beh: addurls creates multiple commits [projects/repronim]
Posted Wed Jan 1 18:16:31 2025 by yoh

fresh test fails: hPut: invalid argument [projects/repronim]
Posted Wed Jan 1 18:16:31 2025 by yoh

webapp --listen port is not used? [projects/repronim]
Posted Wed Jan 1 18:16:31 2025 by yoh

Unable to addurl file:/// on Windows [projects/repronim]
Posted Wed Jan 1 18:16:31 2025 by yoh

annex sync silently resets master to previous sync [projects/repronim]
Posted Wed Jan 1 18:16:31 2025 by yoh

registerurl does not register if external remote [projects/repronim]
Posted Wed Jan 1 18:16:31 2025 by yoh

Please include version of used to build ghc within "git annex version" [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

Regression in `find --json` output [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by kyle

annex init no longer generates default description [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by kyle

regression: http downloads redirecting to ftp are no longer supported [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

gpgconf: invalid option "--kill" (gpg 2.0.22) [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

add --json should provide a "note" with an error message in case of an error [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

7.20181211+git29-gab4a1bed9 fails tests during neurodebian build [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

windows: autostart for annex 64bit looks under x86 [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

git-annex precommit . gets stuck after likely interrupted `annex add` call [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

regression: fails to detect need for pidlock on an NSF mount [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

fails to init under a directory with a "tricky" name [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

get fails to place v7 unlocked file content into the file tree in v7 in repo with detached HEAD [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

3 tests fail while trying to build fresh git annex 6.20181011+git109-gff9ba1f4d [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

double rsync run and test failure [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

addurl fails with non-youtube url with "This url is supported by youtube-dl, but youtube-dl could potentially access any address" [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

multiple ssh prompts, and thread blocked indefinitely in an ??? transaction [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

annex sets remote (regular http) to be ignored while running in docker container [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

initial get -J on exported S3 bucket fails [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

Unable to get/addurl to http link: download failed: InvalidHeader "preload" [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

git annex test never exits? [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh

rmurl marks url not available in wrong remote [projects/repronim]
Posted Thu Jan 5 17:30:31 2023 by yoh