TODOs for DataLad

machine readable information about reason of failure in enableremote [] [] [projects/datalad]
Posted by yoh
Add annex.orig-uuid config for 'ephemeral clones' [projects/datalad]
Posted by yoh
more flexible ("external"?) credentials mechanism [] [projects/datalad]
Posted by yoh
Provide a way to white list local networks (not just specific IPs) [projects/datalad]
Posted by yoh
support ssh:// or sftp:// urls via "built-in" ssh support [] [projects/datalad] []
Posted by yoh

Done

use copy_file_range for get and copy []
Posted by ben
the same path looked up 3 times for libpcre*.so [projects/datalad]
Posted
add --all (or alike) to find and findref [projects/datalad]
Posted by yoh
standlone: growing number of libpcre.so lookups [projects/datalad]
Posted
make add --batch add directories content [projects/datalad]
Posted by yoh
add --dry-run [projects/datalad]
Posted by yoh
command to migrate object files from hashdirlower to hashdirmixed [projects/datalad]
Posted by yoh
--json for registerurl [projects/datalad]
Posted by yoh
init:do not bother scanning if in git-annex branch [projects/datalad]
Posted by yoh
debug for "content changed while it was being sent [projects/datalad]
Posted by yoh
copy-key (--batch) to copy/merge availability info [projects/datalad]
Posted by yoh
hiding a repository [projects/datalad]
Posted
option to `drop path` to not drop "all copies" [projects/datalad]
Posted by yoh
import from directory does not use cp --reflink? [projects/datalad]
Posted by yoh
Avoid lengthy "Scanning for unlocked files ..." [projects/datalad]
Posted by yoh
optimization needed: slow uninit [projects/datalad]
Posted by yoh
calckey [--path] given a checksum and filename? [projects/datalad]
Posted by yoh
--debug-level (and/or -c annex.debug-level) + more debug information from git-annex [projects/datalad]
Posted by yoh
report PID (and may be failure details?) in "process done" debug messages [projects/datalad]
Posted by yoh
make git check-ignore less "cpu heavy" while addurl --batch --fast ? [projects/datalad]
Posted by yoh
external remotes: Add support for ErrorMsg to -FAILURE messages lacking it [projects/datalad]
Posted by yoh
batch async [projects/datalad]
Posted
tolerate intermittent errors upon "export" (and probably copy) to S3 [projects/datalad]
Posted by yoh
may be (again) to prelink or somehow avoid all the failing opens? [projects/datalad]
Posted by yoh
faster (took 2 min) way to realize the need in pidlock? [projects/datalad]
Posted by yoh
export --json --json-progress --json-error-messages [projects/datalad]
Posted by yoh
provide machine readable (--json?) version of initremote --whatelse [projects/datalad]
Posted by yoh
provide windows build with MagicMime [projects/datalad]
Posted by yoh
publicurl config for all special remotes [] [projects/datalad]
Posted by yoh
some way to get a list of options for a special remote of a given type [projects/datalad]
Posted by yoh
external backends [projects/datalad]
Posted
prevent directly printing to stderr error from an attempt to download remote /config file [projects/datalad]
Posted by yoh
config setting to force --progress reporting for some git calls [projects/datalad]
Posted by yoh
configuration option for default "mode" on crippled file systems [projects/datalad]
Posted by yoh
Natively support s3:// urls (for addurl, get, etc) [] [projects/datalad] []
Posted by yoh
provide 'file' in --json-progress record for addurl [projects/datalad]
Posted by yoh
support ~/.netrc for http access authentication specs as was done when wget was used [projects/datalad]
Posted by yoh
include msg with possible reason why command (e.g. add) failed into --json output [projects/datalad]
Posted by yoh
INFO message for custom special remotes [projects/datalad]
Posted by yoh
lockdown hooks [projects/datalad]
Posted
'info filename' to provide information either content is locally present [projects/datalad]
Posted by yoh
--batch for add [projects/datalad]
Posted by yoh
--batch for find [projects/datalad]
Posted by yoh
--batch for info [projects/datalad]
Posted by yoh
add option to whereis to avoid network interactions [projects/datalad]
Posted by yoh
checkpresentkey without explicit remote [projects/datalad]
Posted by yoh
could standalone 'fixed' git-annex binaries be prelinked? [projects/datalad]
Posted by yoh
drop --batch [projects/datalad]
Posted by yoh
get --batch [projects/datalad]
Posted by yoh
interface to the "progress" of annex operations [projects/datalad]
Posted by yoh
make addurl respect annex.largefiles option [projects/datalad]
Posted by yoh
metadata --batch [projects/datalad]
Posted by yoh
parallel get [projects/datalad]
Posted by yoh
return "key" entry in --json output for addurl (and future add) --batch [projects/datalad]
Posted by yoh
git annex info <remote> does not list all the parameters for the remote [projects/datalad]
Posted by yoh
annex add (-u|--update) mode [projects/datalad]
Posted by yoh
output of wanted (and possibly group etc) should not be polluted with "informational" messages [projects/datalad]
Posted by yoh
be able to specify custom commit message for git-annex branch commit [projects/datalad]
Posted by yoh
unlock --json [projects/datalad]
Posted by yoh
Allow for TRANSFER-SUCCESS to report also a URL where key could now be obtained from [projects/datalad]
Posted by yoh
unlock --read-only [] [projects/datalad]
Posted by yoh
annex merge --remotes [] [projects/datalad]
Posted by yoh
sync --branches to sync only specified branches (e.g. git-annex) [projects/datalad]
Posted by yoh
git annex info to include information about repo version? [projects/datalad]
Posted by yoh
make copy --fast faster [projects/datalad]
Posted by yoh
make annex info more efficient [projects/datalad]
Posted by yoh

My bugs

conflict resolution (?) test stalls on an occasion [projects/datalad]
Posted by yoh
export_import_subdir started to fail some times [projects/datalad]
Posted by yoh
windows: commits created despite alwayscommit=fals [projects/datalad]
Posted by kyle
drop blows on lustre: SQLite3 returned ErrorIO [projects/datalad]
Posted by yoh
cannot (or how?) to pass socket path with a space in its path via annex-ssh-options [projects/datalad]
Posted by yoh
does not understand "yes" as boolean true value for autoenable [projects/datalad]
Posted by yoh

Fixed

httpalso windows URL errors [projects/datalad]
Posted
FTBFS on OSX/Windows [projects/datalad]
Posted by yoh
add config var preventing adjusted branch mode [projects/datalad]
Posted by yoh
dropkey -z does not drop etc [projects/datalad]
Posted by yoh
info regression: exits on first bad path [projects/datalad]
Posted by yoh
init fails in a folder with newline in its name [projects/datalad]
Posted
need more debug for failing to get uuid or key [projects/datalad]
Posted by yoh
started to escape characters in the output [projects/datalad]
Posted by yoh
testremote failure on windows due to long filename issues [projects/datalad]
Posted
get -J8 resource exhausted [projects/datalad]
Posted by yoh
"failed to send content to remote" [projects/datalad]
Posted
'Beyond symbolic' link error when link is upstream of repo [projects/datalad]
Posted by kyle
'git annex test' failures introduced by 75aab72d2 [projects/datalad]
Posted by kyle
'init --version=N' can land on unsupported N+1 [projects/datalad]
Posted by kyle
--debug is not in effect if precedes -c [projects/datalad]
Posted by yoh
1 test failure under conda on Windows 10: prop_view_roundtrips [projects/datalad]
Posted by yoh
2 mac crippled FS: Unable to remove all write [projects/datalad]
Posted by yoh
2 ssh connection prompts for password [projects/datalad]
Posted by yoh
A case where file tracked by git unexpectedly becomes annex pointer file [projects/datalad]
Posted by kyle
Buggy external special remote stalls after 7245a9e [projects/datalad]
Posted by kyle
Build failing because MonadFail is not in scope [projects/datalad]
Posted by jwodder
Build failing on Windows since ef3ab0769 [projects/datalad]
Posted by jwodder
Build fails on Windows as of commit 0a9a9c44e [projects/datalad]
Posted by jwodder
Build fails on Windows as of commit 4b1b9d7a8 [projects/datalad]
Posted by jwodder
Build fails on Windows as of commit a706708d1 [projects/datalad]
Posted by jwodder
Build fails on Windows as of commit ddd7d1d11 [projects/datalad]
Posted by jwodder
Build/OSXMkLibs.hs does not resolve @loader_path [projects/datalad]
Posted by jwodder
Change to annex.largefiles leaves repo modified [projects/datalad]
Posted by bpoldrack
Deleted files not considered with wanted="anything" [projects/datalad]
Posted by kyle
Exclude submodules from export to WEBDAV [projects/datalad]
Posted
FTBFS: Couldn't match type `Annex.AnnexState' ... [projects/datalad]
Posted by yoh
Git LFS as a special remote on GitLab not working [projects/datalad]
Posted
Guard against previously annexed dotfiles being converted to git files? [projects/datalad]
Posted by kyle
JSON results for `export` have file:null property [projects/datalad]
Posted
OSX: addurl --batch --json spits out shortened output string dies off with 4 [projects/datalad]
Posted by yoh
Patch for compilation errors on Windows [projects/datalad]
Posted by jwodder
R/O permissions are stalking me somehow [projects/datalad]
Posted by yoh
Recent hang with rsync remote with older systems (Xenial, Jessie) [projects/datalad]
Posted by kyle
Repo contains invalid Windows paths again [projects/datalad]
Posted by jwodder
SSH-based git-annex-init hang on older systems (Xenial, Jessie) [projects/datalad]
Posted by kyle
Some calls to git repeat --config values [projects/datalad]
Posted by kyle
Submodule deletion not synced from adjusted branch [projects/datalad]
Posted by kyle
Sync of adjusted branch does not propagate changed submodule commit [projects/datalad]
Posted by kyle
Syntax error in comit f29d49d47 [projects/datalad]
Posted by jwodder
Tests failing on Windows [projects/datalad]
Posted by jwodder
Too difficult if not impossible to explicitly add/keep file under git (not annex) in v6 without employing .gitattributes [projects/datalad]
Posted by yoh
W:prop_relPathDirToFileAbs_basics started to fail [projects/datalad]
Posted by yoh
WEBDAV export has wrong subdirectory content [projects/datalad]
Posted
Windows build failing as of commit cb7bb3e [projects/datalad]
Posted by jwodder
Windows: drop claims that "content is locked" [projects/datalad]
Posted by yoh
Windows: substantial per-file cost for `add` [projects/datalad]
Posted
add --dry-run seems have introduced a "regression" [projects/datalad]
Posted by yoh
add --force-small fails on modified submodules [projects/datalad]
Posted by kyle
adds file destined for annex into git in 'addurl' [projects/datalad]
Posted by yoh
addurl --batch --with-files doesn't add file into git until pipe is closed [projects/datalad]
Posted by yoh
addurl --batch (--json or not) doesn't report failure correctly if non-annexed file exists [projects/datalad]
Posted by yoh
addurl --batch decides to talk to ssh remotes for some reason [projects/datalad]
Posted by yoh
addurl --file causes file redownload even if it already present [projects/datalad]
Posted by yoh
annex add ignores .-prefixed directories [projects/datalad]
Posted by yoh
annex doesn't fixup symlinks when "git commit path_to_repo" is used [projects/datalad]
Posted by yoh
annex drop fails to determine availability on a http url redirecting to ftp [projects/datalad]
Posted by yoh
annex drop is not "in effect" for load which was "addurl --batch"ed but not yet committed [projects/datalad]
Posted by yoh
annex get -J 16 via ssh stalls [projects/datalad]
Posted by yoh
annex.pidlock can cause git-annex get -J to fail to take transfer lock [projects/datalad]
Posted by yoh
silently skipping files that are not in git or not annexed is sometimes surprising to some [projects/datalad]
Posted by yoh
annex sync (in direct mode only) does not actually update local branch/tree [projects/datalad]
Posted by yoh
annex view barfs fatal: Unable to add (null) to database [projects/datalad]
Posted by yoh
annex-ssh-options dropped since 8.20200330 [projects/datalad]
Posted by kyle
annex.hardlink is not "in effect" in thin mode [projects/datalad]
Posted by yoh
autoenable not done for implicit init [projects/datalad]
Posted by yoh
autostart/git-annex.desktop gets resurrected [projects/datalad]
Posted by yoh
awkward error from annex whenever operating on a clone with submodules [projects/datalad]
Posted by yoh
be robust to additions of more specific mime types to libmagic (e.g. application/json) [projects/datalad]
Posted by yoh
build of 7.20191230+git152-gefb981388 fails the prop_read_write_transferinfo test [projects/datalad]
Posted by yoh
can't make annex happy in freeze/thaw [projects/datalad]
Posted by yoh
cannot "install" standalone git annex within afs mount [projects/datalad]
Posted by yoh
cannot commit "annex add"ed modified file which switched its largefile status to be committed to git now [projects/datalad]
Posted by yoh
case where using pathspec with git-commit leaves s [projects/datalad]
Posted by kyle
change in behavior after 8.20210621 [projects/datalad]
Posted by yoh
clash of -j in copy for --json --json-progress [projects/datalad]
Posted by yoh
commits created despite alwayscommit=false as of recent change [projects/datalad]
Posted by kyle
--json-error-messages could apply to file not found error [projects/datalad]
Posted by yoh
could standalone copy of git ship/deploy hooks samples as well as stock git? [projects/datalad]
Posted by yoh
crippled filesystem: SQLite3 returned ErrorBusy [projects/datalad]
Posted
crippledfs: annex-init crash when remote name is [projects/datalad]
Posted
diffdriver does not workout on unlocked file? [projects/datalad]
Posted by yoh
does not complain/fail if by mistake option value passed within arg for -c [projects/datalad]
Posted by yoh
drop on NFS (no pidlock need detected) leaves annex/objects/XX/YY/KEY dir behind [projects/datalad]
Posted by yoh
dropkey --batch --json --force is always succesfull [projects/datalad]
Posted by yoh
duplicate progress reports in parallel 'get' [projects/datalad]
Posted by yoh
enableremote stuck with a recentish git-annex [projects/datalad]
Posted by yoh
encfs support -- shouldn't it be treated as crippled already? [projects/datalad]
Posted by yoh
error message in addurl is not channeled into json record with --json-error-messages [projects/datalad]
Posted by yoh
error: invalid object while setting metadata [projects/datalad]
Posted by yoh
export -J 6 to S3: transfer already in progress [projects/datalad]
Posted by yoh
export_import fails on crippled FS on ubuntu [projects/datalad]
Posted by yoh
fails to `get` in parallel for a freshly clone from public s3 bucket where versioning info was forgotten [projects/datalad]
Posted by yoh
fails to verify presence via http while wget fetches it just fine [projects/datalad]
Posted by yoh
find --batch reports files that have no content [projects/datalad]
Posted by kyle
find --branch: no results with --{un,}locked [projects/datalad]
Posted by kyle
fresh test fails for "trust:" - trust failed [projects/datalad]
Posted by yoh
fromkey: create directories for pointer files? [projects/datalad]
Posted by kyle
fsck does not detect/fix some key directories correctly [projects/datalad]
Posted by yoh
get --json fails whenever plain get works (with https urls) [projects/datalad]
Posted by yoh
get -J "fails" to get files with the same key [projects/datalad]
Posted by yoh
get -J cannot be used with password-based authentication [projects/datalad]
Posted by yoh
get -J from ssh remote tries to lock in home directory? [projects/datalad]
Posted by yoh
get -J5 : pidlock: getFileStatus: does not exist [projects/datalad]
Posted by yoh
get -JX: transfer already in progress ... for some files [projects/datalad]
Posted by yoh
get fails (only in --debug) with rsync error [projects/datalad]
Posted by yoh
get from the web remote fails (redirect?) - lack of further debug info [projects/datalad]
Posted by yoh
get is stuck unless a clone was previously explicitly "annex init"ed [projects/datalad]
Posted by yoh
get over ssh fails with fd:19: hClose: resource vanished [projects/datalad]
Posted by yoh
git annex adjust --unlock seems to cause migration of a file to another backend [projects/datalad]
Posted by yoh
git annex info fails on NFS: waitToSetLock: resource exhausted (No locks available) [projects/datalad]
Posted by yoh
git-annex get: createDirectory: does not exist [projects/datalad]
Posted
git-annex looses itself on Windows? [projects/datalad]
Posted by yoh
git-annex no longer provides remote name with GETCONFIG name [projects/datalad]
Posted by mih
git-annex: content is locked while trying to move under NFS and pidlock [projects/datalad]
Posted by yoh
graft/graft cleanup commits -- really needed? [projects/datalad]
Posted by yoh
extend external special remote protocol so a process can refuse to PREPARE, making -J not use it concurrently [projects/datalad]
Posted by yoh
git-annex and NFS don't mix; could git annex init detect NFS and refuse to use it? [projects/datalad]
Posted
impossible to login to the website at times [?confirmed] [projects/datalad]
Posted by yoh
impossible to perform "read-only" git annex info without write permissions [projects/datalad]
Posted by yoh
inconsistent output upon addurl --batch complicates if not forbids reliable parsing of output [projects/datalad]
Posted by yoh
info --json lists backend usage stats as a list of lists [projects/datalad]
Posted by yoh
init: syntax warnings in diff driver on Windows [projects/datalad]
Posted
initremote type=git fresh "regression" [projects/datalad]
Posted by yoh
lookupkey started to spit out "debug" messages to stdout [projects/datalad]
Posted by yoh
man page for command misses actual command in the synopsis for git-annex-checkpresentkey [projects/datalad]
Posted by yoh
merge-annex-branches=false - automate and extend [projects/datalad]
Posted by yoh
metadata --remove stalls as of 88a7fb5cb [projects/datalad]
Posted by kyle
mysterious dependency of git annex status output of the added file [projects/datalad]
Posted by yoh
new whereis --json lost information about web urls if other special remotes provide them [projects/datalad]
Posted by yoh
no longer non-0 exit for "find ... nonexisting" [projects/datalad]
Posted by yoh
old(er) cp from coreutils lacks --reflink [projects/datalad]
Posted by yoh
on some remotes failing to detect annex spits out message to stderr and empty lines to stderr, ignores --json-error-messages [projects/datalad]
Posted by yoh
parallel get can fail some downloads and require re-getting [projects/datalad]
Posted by yoh
parallel get to the files for the same key would fail with thread blocked indefinitely in an STM transaction [projects/datalad]
Posted by yoh
prematurely (can't check offline) marks remote as annex-ignore [projects/datalad]
Posted by yoh
presence of AWS creds ruins access to public urls [projects/datalad]
Posted by yoh
prevent silent data loss on unlocked files [projects/datalad]
Posted by yoh
prop_isomorphic_key_encode fails with external backend changes [projects/datalad]
Posted by kyle
prop_relPathDirToFileAbs_basics fail on crippled ~ [projects/datalad]
Posted by yoh
regression - fails to drop . Exit code 11 wo --debug, and 1 with --debug [projects/datalad]
Posted by yoh
regression - yt: prefix for "regular" urls [projects/datalad]
Posted by yoh
regression: annex add of moved file errors out [projects/datalad]
Posted by yoh
regression: fails to 'add .' if file was renamed [projects/datalad]
Posted by yoh
regression: index.lck in shared-group is not g+w [projects/datalad]
Posted by yoh
regression: standalone build is deficient on linux after 7.20190819+git2-g908476a9b-1~ndall+1 some time [projects/datalad]
Posted by yoh
reinject: silent failure with absolute path to poi [projects/datalad]
Posted by kyle
remote repository must be version 6 as well to have copied files appear correctly [projects/datalad]
Posted by yoh
reports success when addurl --batch a file which is .gitignore'd [projects/datalad]
Posted by yoh
return --backend for addurl ? [projects/datalad]
Posted by yoh
running tests on NFS HOME does not exit cleanly: gpgtmp [projects/datalad]
Posted by yoh
set metadata leaks from one (staged) key to another during rename of file [projects/datalad]
Posted by yoh
shared setting of git causes annex'ed files to be writeable! [projects/datalad]
Posted by yoh
should not assume entire name to be an extension? [projects/datalad]
Posted by yoh
shouldn't keep permissions of the ssh remote? [projects/datalad]
Posted by yoh
some annex addurl --fast --with-files --json --json-error-messages --batch do not quit [projects/datalad]
Posted by yoh
some test(s?) regularly fail starting recently [projects/datalad]
Posted by yoh
some tests fail while running under NFS [projects/datalad]
Posted by yoh
some transfers for get -J4 fail over ssh/rsync and require retry [projects/datalad]
Posted by yoh
sporadic (?) fail of crypto test? [projects/datalad]
Posted by yoh
standalone build is slightly out of date [projects/datalad]
Posted by yoh
standalone builds shouldn't pollute ~/.ssh with helpers merely upon annex init [projects/datalad]
Posted by yoh
standalone runshell can race and fail to remove `~/.cache/git-annex/locales/` dirs [projects/datalad]
Posted by yoh
standalone shim is segfaulting if IFS=$'\013' [projects/datalad]
Posted by yoh
storeKey when already present failures on Windows [projects/datalad]
Posted by yoh
strips _ from extensions in E backends? [projects/datalad]
Posted by yoh
test fail on windows: permission denied [projects/datalad]
Posted by yoh
testremote breeds way too many instances of the externals remote [projects/datalad]
Posted by yoh
testremote failures starting with aeca7c220 [projects/datalad]
Posted by kyle
testremote with external remote hangs after asyncexternal merge [projects/datalad]
Posted by kyle
tests fail (gpg-agent related?) when running build inside singularity container [projects/datalad]
Posted by yoh
tests fail on Linux build [projects/datalad]
Posted by yoh
thread blocked indefinitely in an STM transaction while moving within a local clone [projects/datalad]
Posted by yoh
treatment of largefiles is not working for addurl --fast (or --relaxed) [projects/datalad]
Posted by yoh
unable to get content via ssh without write perms [projects/datalad]
Posted by yoh
unable to get from public S3 remote without clear reasoning why [projects/datalad]
Posted by yoh
unclear why annex fails to get a file from a public S3 bucket where it exported before [projects/datalad]
Posted by yoh
upgrade (from v5) fails without stating any reason/hints [projects/datalad]
Posted by yoh
use of annex in submodule replaces .git with incorrect symlink [projects/datalad]
Posted by yoh
using regular magic file warning pollutes stderr [projects/datalad]
Posted by yoh
v6 - under subdir: git add "whines", git commit "blows" [projects/datalad]
Posted by yoh
v8 conflict resolution (adjusted branch) teststuck [projects/datalad]
Posted by yoh
wanted on read-only repo crashes [projects/datalad]
Posted by yoh
wanted started to dump debug output to stdout [projects/datalad]
Posted by yoh
whereis shouldn't just crash if one of the special remotes "drivers" is not available [projects/datalad]
Posted by yoh
SQLite3 returned ErrorBusy while attempting to perform step: database is locked [projects/datalad]
Posted by yoh
Fails to drop key on windows (Access denied) [] [projects/datalad]
Posted